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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Malapachy_3682E3 ubiquitin ligase. (720 aa)    
Predicted Functional Partners:
Malapachy_0925
Rsa4-wd-repeat protein involved in ribosome biogenesis.
 
      0.767
Malapachy_0736
Elongation factor 3.
   
 
 0.677
Malapachy_0320
40s ribosomal protein s3.
    
 
 0.667
Malapachy_3132
Sec63-domain-containing protein.
    
 
 0.608
Malapachy_1088
40s ribosomal protein s20.
    
 
 0.598
Malapachy_2785
40s ribosomal protein s10.
    
 
 0.588
Malapachy_1672
Molecular chaperone.
    
 
 0.583
Malapachy_0681
E3 ubiquitin ligase.
    
 
 0.565
Malapachy_3081
Mrna export factor elf1.
   
 
 0.559
Malapachy_3247
Guanine nucleotide binding protein beta subunit.
    
 
 0.558
Your Current Organism:
Malassezia pachydermatis
NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis
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