STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Malapachy_1374Fmn-linked oxidoreductase. (422 aa)    
Predicted Functional Partners:
Malapachy_1764
Prolyl-trna synthetase.
   
 
 0.737
Malapachy_4209
Glutamate-trna ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.737
Malapachy_2428
Ribosome biogenesis protein brx1.
   
    0.607
Malapachy_0085
Thump domain-containing protein.
   
 
 0.572
Malapachy_0714
tRNA (guanine(26)-N(2))-dimethyltransferase.
   
 
 0.564
Malapachy_2161
Prolyl-trna synthetase.
   
 
 0.546
Malapachy_3744
tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family.
  
  
0.530
Malapachy_4069
Dus-domain-containing protein.
  
  
0.518
Malapachy_3658
Pseudouridine synthase.
   
 
 0.512
Malapachy_3360
S-adenosyl-l-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.506
Your Current Organism:
Malassezia pachydermatis
NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis
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