STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Malapachy_0203Serine arginine-rich splicing factor 4 isoform x1. (334 aa)    
Predicted Functional Partners:
Malapachy_1212
Pre-mrna splicing factor u2af large chain.
   
 0.986
Malapachy_3537
Cmgc srpk protein kinase.
    
 0.974
Malapachy_0817
Transformer-2-beta isoform 3.
   
 0.963
Malapachy_0717
Nuclear cap-binding protein subunit 2.
    
 0.961
Malapachy_4132
Cef1-required during g2 m transition.
    
 
 0.953
Malapachy_2739
Rna recognition motif containing protein.
   
 
 0.948
Malapachy_0765
Arm repeat-containing protein.
    
 
 0.914
Malapachy_3110
80 kDa nuclear cap binding protein.
   
 0.911
Malapachy_2637
Ngr1 protein.
    
 0.911
Malapachy_3033
Rna-binding protein.
    
 0.911
Your Current Organism:
Malassezia pachydermatis
NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis
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