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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Malapachy_2224Ribosome biogenesis protein bms1. (1001 aa)    
Predicted Functional Partners:
Malapachy_3620
18s rrna biogenesis protein.
   
 0.999
Malapachy_3154
Wd40 repeat-like protein.
   
 0.998
Malapachy_0635
U3 small nucleolar rna-associated protein 10.
   
 0.998
Malapachy_2689
Uncharacterized protein.
   
 
 0.998
Malapachy_2537
Utp13-u3 snornp protein.
   
 
 0.998
Malapachy_2196
Sas10 domain-containing protein.
   
 
 0.998
Malapachy_1842
Nuc189-domain-containing protein.
   
 0.998
Malapachy_1612
Wd40 repeat-like protein.
   
 0.998
Malapachy_0155
Nuc153 and wd40 repeat-containing nucleolar rrna processing-related protein.
   
 
 0.998
Malapachy_0178
Utp14-domain-containing protein.
   
 
 0.998
Your Current Organism:
Malassezia pachydermatis
NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis
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