Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Malapachy_3005Uncharacterized protein. (130 aa)    
Predicted Functional Partners:
Malapachy_0110
Ubiquitin-conjugating enzyme9; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.842
Malapachy_3186
Inorganic diphosphatase.
     
  0.646
Malapachy_0425
Chromosome condensation.
   
 
 0.500
Malapachy_2537
Utp13-u3 snornp protein.
     
  0.490
Malapachy_3273
Uncharacterized protein.
      
 0.483
Malapachy_2579
Small ubiquitin-related modifier.
   
  0.437
Malapachy_0704
Aos1-smt3p activating protein.
    
 0.436
Malapachy_0505
Rwd-domain-containing protein.
      
 0.426
Malapachy_4109
Urease accessory protein.
   
  
 0.423
Malapachy_2756
Histone H3; Belongs to the histone H3 family.
    
 
 0.418
Your Current Organism:
Malassezia pachydermatis
NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis
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