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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Malapachy_3005Uncharacterized protein. (130 aa)    
Predicted Functional Partners:
Malapachy_0110
Ubiquitin-conjugating enzyme9; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.921
Malapachy_0704
Aos1-smt3p activating protein.
    
 0.641
Malapachy_2058
Ubiquitin-activating enzyme E1-like; Belongs to the ubiquitin-activating E1 family.
    
 0.600
Malapachy_1478
Transcription elongation factor.
    
 0.593
Malapachy_2579
Small ubiquitin-related modifier.
   
 0.545
Malapachy_0491
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
     
 0.538
Malapachy_0762
Lymphoid-specific helicase-like protein.
    
 0.531
Malapachy_3342
Chromatin remodelling complex atpase chain isw1.
    
 0.531
Malapachy_0638
Pin domain-like protein.
    
  0.505
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
    
  0.505
Your Current Organism:
Malassezia pachydermatis
NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis
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