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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Malapachy_0613Chitin deacetylase. (180 aa)    
Predicted Functional Partners:
Malapachy_0298
Carbohydrate esterase family 4 protein.
 
     0.914
Malapachy_0412
Uncharacterized protein.
    
 0.747
Malapachy_3720
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
 0.740
Malapachy_2652
Uncharacterized protein.
    
 0.718
Malapachy_1925
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.704
Malapachy_0697
Dna repair protein rad50.
    
 0.698
Malapachy_1676
Uncharacterized protein.
    
 0.696
Malapachy_0688
Adenylate cyclase.
    
 0.696
Malapachy_4003
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
  0.668
Malapachy_2685
Clathrin adaptor mu subunit; Belongs to the adaptor complexes medium subunit family.
    
  0.668
Your Current Organism:
Malassezia pachydermatis
NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis
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