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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Malapachy_2788Pre-mrna splicing factor. (671 aa)    
Predicted Functional Partners:
Malapachy_3752
Pre-mrna splicing factor.
   
 0.951
Malapachy_1406
Pre-mrna-splicing factor slu7.
    
 0.949
Malapachy_1708
Pre-mrna splicing factor.
    
 0.948
Malapachy_2822
Mif4g-domain-containing protein.
   
 0.943
Malapachy_2847
Uncharacterized protein.
    
 0.940
Malapachy_0545
Atp-dependent rna helicase sub2.
    
 0.940
Malapachy_1068
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.929
Malapachy_4197
Small nuclear ribonucleoprotein Sm D2.
   
 0.928
Malapachy_0622
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.928
Malapachy_2202
Rna-binding domain-containing protein.
    
 0.926
Your Current Organism:
Malassezia pachydermatis
NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis
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