Malapachy_0084 protein (Malassezia pachydermatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Malapachy_0084

Vacuolar protein sorting-associated protein 36. (419 aa)

Predicted Functional Partners:

Malapachy_0655

0.999

Malapachy_3716

0.989

Malapachy_0158

0.976

Malapachy_2007

0.953

Malapachy_0685

0.937

Malapachy_0197

0.935

Malapachy_1354

0.889

Malapachy_1268

0.832

Malapachy_0800

0.805

Malapachy_2668

0.767

Your Current Organism:

Malassezia pachydermatis

NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Malapachy_0084	Malapachy_0158	A0A0M9VNH9	A0A0M8MTB9	Vacuolar protein sorting-associated protein 36.	Vps20-vaculolar protein sorting.	0.976
Malapachy_0084	Malapachy_0197	A0A0M9VNH9	A0A0M9VNM3	Vacuolar protein sorting-associated protein 36.	Snf7 protein.	0.935
Malapachy_0084	Malapachy_0655	A0A0M9VNH9	A0A0M9VPN0	Vacuolar protein sorting-associated protein 36.	Uncharacterized protein.	0.999
Malapachy_0084	Malapachy_0685	A0A0M9VNH9	A0A0M8MME2	Vacuolar protein sorting-associated protein 36.	Uncharacterized protein.	0.937
Malapachy_0084	Malapachy_0800	A0A0M9VNH9	A0A0M9VPW8	Vacuolar protein sorting-associated protein 36.	Vacuolar sorting protein vps24.	0.805
Malapachy_0084	Malapachy_1268	A0A0M9VNH9	A0A0M9VPY3	Vacuolar protein sorting-associated protein 36.	Ubiquitin binding protein.	0.832
Malapachy_0084	Malapachy_1354	A0A0M9VNH9	A0A0N0RRX1	Vacuolar protein sorting-associated protein 36.	Snf7-domain-containing protein.	0.889
Malapachy_0084	Malapachy_2007	A0A0M9VNH9	A0A0N0RS39	Vacuolar protein sorting-associated protein 36.	Ubiquitin domain containing protein.	0.953
Malapachy_0084	Malapachy_2668	A0A0M9VNH9	A0A0M8MMD1	Vacuolar protein sorting-associated protein 36.	Boi1-bem1 protein-binding protein.	0.767
Malapachy_0084	Malapachy_3716	A0A0M9VNH9	A0A0M8MTP8	Vacuolar protein sorting-associated protein 36.	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.989
Malapachy_0158	Malapachy_0084	A0A0M8MTB9	A0A0M9VNH9	Vps20-vaculolar protein sorting.	Vacuolar protein sorting-associated protein 36.	0.976
Malapachy_0158	Malapachy_0197	A0A0M8MTB9	A0A0M9VNM3	Vps20-vaculolar protein sorting.	Snf7 protein.	0.998
Malapachy_0158	Malapachy_0655	A0A0M8MTB9	A0A0M9VPN0	Vps20-vaculolar protein sorting.	Uncharacterized protein.	0.996
Malapachy_0158	Malapachy_0800	A0A0M8MTB9	A0A0M9VPW8	Vps20-vaculolar protein sorting.	Vacuolar sorting protein vps24.	0.995
Malapachy_0158	Malapachy_1268	A0A0M8MTB9	A0A0M9VPY3	Vps20-vaculolar protein sorting.	Ubiquitin binding protein.	0.531
Malapachy_0158	Malapachy_1354	A0A0M8MTB9	A0A0N0RRX1	Vps20-vaculolar protein sorting.	Snf7-domain-containing protein.	0.995
Malapachy_0158	Malapachy_3716	A0A0M8MTB9	A0A0M8MTP8	Vps20-vaculolar protein sorting.	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.899
Malapachy_0197	Malapachy_0084	A0A0M9VNM3	A0A0M9VNH9	Snf7 protein.	Vacuolar protein sorting-associated protein 36.	0.935
Malapachy_0197	Malapachy_0158	A0A0M9VNM3	A0A0M8MTB9	Snf7 protein.	Vps20-vaculolar protein sorting.	0.998
Malapachy_0197	Malapachy_0655	A0A0M9VNM3	A0A0M9VPN0	Snf7 protein.	Uncharacterized protein.	0.935