STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Malapachy_002060s ribosomal protein l38; Belongs to the eukaryotic ribosomal protein eL38 family. (80 aa)    
Predicted Functional Partners:
Malapachy_0237
Ribosomal protein s25.
   
 
 0.999
Malapachy_0010
60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.
   
 0.999
Malapachy_0006
40s ribosomal protein s14; Belongs to the universal ribosomal protein uS11 family.
   
 
 0.999
Malapachy_1290
60s ribosomal protein l4.
   
 0.999
Malapachy_3836
60s ribosomal protein l35.
   
 0.999
Malapachy_1865
60s ribosomal protein l22.
   
 0.999
Malapachy_1541
50s ribosomal protein l22; Belongs to the universal ribosomal protein uL22 family.
   
 0.999
Malapachy_0685
Uncharacterized protein.
   
 0.999
Malapachy_1583
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
 
 0.999
Malapachy_1649
60s ribosomal protein l34-b.
   
 
 0.999
Your Current Organism:
Malassezia pachydermatis
NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis
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