Malapachy_0896 protein (Malassezia pachydermatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Malapachy_0896

Dna-directed rna polymerase iii subunit rpc9. (213 aa)

Predicted Functional Partners:

Malapachy_0004

0.999

Malapachy_4214

0.997

Malapachy_2465

0.997

Malapachy_2282

0.997

Malapachy_0152

0.997

Malapachy_1063

0.996

Malapachy_4121

0.996

Malapachy_2338

0.996

Malapachy_3383

0.996

Malapachy_2432

0.995

Your Current Organism:

Malassezia pachydermatis

NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Malapachy_0004	Malapachy_0152	A0A0M8MSJ6	A0A0N0RS45	Polymerase iii polypeptide h.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
Malapachy_0004	Malapachy_0896	A0A0M8MSJ6	A0A0M9VPN1	Polymerase iii polypeptide h.	Dna-directed rna polymerase iii subunit rpc9.	0.999
Malapachy_0004	Malapachy_1063	A0A0M8MSJ6	A0A0M8MLQ8	Polymerase iii polypeptide h.	Dna-directed rna polymerase iii subunit rpc5.	0.996
Malapachy_0004	Malapachy_2282	A0A0M8MSJ6	A0A0M9VQD3	Polymerase iii polypeptide h.	Rpb5 subunit of dna-directed rna polymerase.	0.998
Malapachy_0004	Malapachy_2338	A0A0M8MSJ6	A0A0M8MWW3	Polymerase iii polypeptide h.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
Malapachy_0004	Malapachy_2432	A0A0M8MSJ6	A0A0M8MMH0	Polymerase iii polypeptide h.	Dna-directed rna polymerase subunit.	0.996
Malapachy_0004	Malapachy_2465	A0A0M8MSJ6	A0A0M9VQA1	Polymerase iii polypeptide h.	Rpc34-dna-directed rna polymerase 34 kd subunit.	0.998
Malapachy_0004	Malapachy_3383	A0A0M8MSJ6	A0A0M8MYW3	Polymerase iii polypeptide h.	Rpc40-40 kd subunit of dna-directed rna polymerases i and iii.	0.996
Malapachy_0004	Malapachy_4121	A0A0M8MSJ6	A0A0M8MV21	Polymerase iii polypeptide h.	Rpc53-47 kd subunit of dna-directed rna polymerase iii.	0.997
Malapachy_0004	Malapachy_4214	A0A0M8MSJ6	A0A0M9VPN4	Polymerase iii polypeptide h.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.998
Malapachy_0152	Malapachy_0004	A0A0N0RS45	A0A0M8MSJ6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Polymerase iii polypeptide h.	0.997
Malapachy_0152	Malapachy_0896	A0A0N0RS45	A0A0M9VPN1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Dna-directed rna polymerase iii subunit rpc9.	0.997
Malapachy_0152	Malapachy_1063	A0A0N0RS45	A0A0M8MLQ8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Dna-directed rna polymerase iii subunit rpc5.	0.996
Malapachy_0152	Malapachy_2282	A0A0N0RS45	A0A0M9VQD3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Rpb5 subunit of dna-directed rna polymerase.	0.999
Malapachy_0152	Malapachy_2338	A0A0N0RS45	A0A0M8MWW3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
Malapachy_0152	Malapachy_2432	A0A0N0RS45	A0A0M8MMH0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Dna-directed rna polymerase subunit.	0.999
Malapachy_0152	Malapachy_2465	A0A0N0RS45	A0A0M9VQA1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Rpc34-dna-directed rna polymerase 34 kd subunit.	0.997
Malapachy_0152	Malapachy_3383	A0A0N0RS45	A0A0M8MYW3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Rpc40-40 kd subunit of dna-directed rna polymerases i and iii.	0.999
Malapachy_0152	Malapachy_4121	A0A0N0RS45	A0A0M8MV21	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Rpc53-47 kd subunit of dna-directed rna polymerase iii.	0.997
Malapachy_0152	Malapachy_4214	A0A0N0RS45	A0A0M9VPN4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999