Malapachy_3185 protein (Malassezia pachydermatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Malapachy_3185

Atp binding protein; Belongs to the STXBP/unc-18/SEC1 family. (629 aa)

Predicted Functional Partners:

Malapachy_1074

0.996

Malapachy_0080

0.996

Malapachy_0990

0.996

Malapachy_2983

0.996

Malapachy_2095

0.996

Malapachy_4048

0.990

Malapachy_0033

0.975

Malapachy_3333

0.972

Malapachy_3818

0.963

Malapachy_1707

0.959

Your Current Organism:

Malassezia pachydermatis

NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Malapachy_0033	Malapachy_0080	A0A0M8MKM4	A0A0M8MN08	Vps8 domain-containing protein.	Uncharacterized protein.	0.888
Malapachy_0033	Malapachy_0990	A0A0M8MKM4	A0A0M8MUU4	Vps8 domain-containing protein.	Vacuolar protein sorting-associated protein 11 like protein.	0.989
Malapachy_0033	Malapachy_1074	A0A0M8MKM4	A0A0M8MLN4	Vps8 domain-containing protein.	Vacuolar assembling protein vps41.	0.652
Malapachy_0033	Malapachy_2095	A0A0M8MKM4	A0A0N0RSI9	Vps8 domain-containing protein.	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	0.990
Malapachy_0033	Malapachy_2983	A0A0M8MKM4	A0A0M9VRB8	Vps8 domain-containing protein.	Pep3_Vps18 domain-containing protein.	0.989
Malapachy_0033	Malapachy_3185	A0A0M8MKM4	A0A0M9VR14	Vps8 domain-containing protein.	Atp binding protein; Belongs to the STXBP/unc-18/SEC1 family.	0.975
Malapachy_0033	Malapachy_3333	A0A0M8MKM4	A0A0M8MSF0	Vps8 domain-containing protein.	Pep12 syntaxin (T-snare) vacuolar; Belongs to the syntaxin family.	0.504
Malapachy_0033	Malapachy_4048	A0A0M8MKM4	A0A0M8MTU2	Vps8 domain-containing protein.	CNH domain-containing protein.	0.907
Malapachy_0080	Malapachy_0033	A0A0M8MN08	A0A0M8MKM4	Uncharacterized protein.	Vps8 domain-containing protein.	0.888
Malapachy_0080	Malapachy_0990	A0A0M8MN08	A0A0M8MUU4	Uncharacterized protein.	Vacuolar protein sorting-associated protein 11 like protein.	0.996
Malapachy_0080	Malapachy_1074	A0A0M8MN08	A0A0M8MLN4	Uncharacterized protein.	Vacuolar assembling protein vps41.	0.996
Malapachy_0080	Malapachy_1707	A0A0M8MN08	A0A0M8MUC5	Uncharacterized protein.	Ras-like protein rab-6a.	0.942
Malapachy_0080	Malapachy_2095	A0A0M8MN08	A0A0N0RSI9	Uncharacterized protein.	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	0.997
Malapachy_0080	Malapachy_2983	A0A0M8MN08	A0A0M9VRB8	Uncharacterized protein.	Pep3_Vps18 domain-containing protein.	0.996
Malapachy_0080	Malapachy_3185	A0A0M8MN08	A0A0M9VR14	Uncharacterized protein.	Atp binding protein; Belongs to the STXBP/unc-18/SEC1 family.	0.996
Malapachy_0080	Malapachy_3333	A0A0M8MN08	A0A0M8MSF0	Uncharacterized protein.	Pep12 syntaxin (T-snare) vacuolar; Belongs to the syntaxin family.	0.896
Malapachy_0080	Malapachy_3818	A0A0M8MN08	A0A0N0RSB6	Uncharacterized protein.	Vesicle transport v-snare protein vti1.	0.955
Malapachy_0080	Malapachy_4048	A0A0M8MN08	A0A0M8MTU2	Uncharacterized protein.	CNH domain-containing protein.	0.964
Malapachy_0990	Malapachy_0033	A0A0M8MUU4	A0A0M8MKM4	Vacuolar protein sorting-associated protein 11 like protein.	Vps8 domain-containing protein.	0.989
Malapachy_0990	Malapachy_0080	A0A0M8MUU4	A0A0M8MN08	Vacuolar protein sorting-associated protein 11 like protein.	Uncharacterized protein.	0.996