Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Malapachy_3558Atp dependent helicase. (968 aa)    
Predicted Functional Partners:
Malapachy_1380
Arm repeat-containing protein.
   
 0.990
Malapachy_2866
Nonsense-mediated decay protein upf3.
    
 0.989
Malapachy_0186
Peptide chain release factor erf subunit 2.
    
 0.963
Malapachy_1296
5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.
    
 
 0.938
Malapachy_1342
Peptide chain release factor erf arf subunit 1.
   
 0.932
Malapachy_2349
Uncharacterized protein.
   
 0.927
Malapachy_1357
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 0.913
Malapachy_0383
Mrna-decapping enzyme 1b.
    
 0.907
Malapachy_1172
Rna-binding protein with serine-rich domain 1-like protein.
    
 0.900
Malapachy_0717
Nuclear cap-binding protein subunit 2.
    
 0.897
Your Current Organism:
Malassezia pachydermatis
NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis
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