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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Malapachy_0454Transcription elongation factor b polypeptide 3. (95 aa)    
Predicted Functional Partners:
Malapachy_0917
Transcriptional elongation regulator elc1 elongin c; Belongs to the SKP1 family.
    
 0.998
Malapachy_2223
60s ribosomal protein l5.
    
 
 0.888
Malapachy_0795
60s ribosomal protein l18.
   
   0.886
Malapachy_1549
60s ribosomal protein l23; Belongs to the universal ribosomal protein uL14 family.
    
 
 0.882
Malapachy_1065
Rpl28-60s large subunit ribosomal protein; Belongs to the universal ribosomal protein uL15 family.
   
   0.881
Malapachy_1290
60s ribosomal protein l4.
    
   0.880
Malapachy_3836
60s ribosomal protein l35.
    
   0.880
Malapachy_1865
60s ribosomal protein l22.
    
   0.880
Malapachy_3338
60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.
    
   0.880
Malapachy_3630
60s ribosomal protein l30.
    
   0.880
Your Current Organism:
Malassezia pachydermatis
NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis
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