STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1S7ULQ1Putative high mobility group protein. (346 aa)    
Predicted Functional Partners:
A0A1W2TNW6
Putative RNA polymerase I associated factor.
    
 0.842
A0A1W2TM12
Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family.
    
 0.827
A0A1W2TUC9
Putative transcription initiation factor TFIIH subunit 1.
    
 0.794
A0A1W2TEE8
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.
    
 0.793
A0A1W2TK87
Putative transcription initiation factor TFIIH subunit 3.
    
 0.785
A0A1S8A9C7
Putative DNA excision repair protein ERCC-3.
   
 0.775
A0A1W2TCJ0
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.769
A0A1W2TPM5
Putative actin-related ARP5 class; Belongs to the actin family.
    
 0.768
A0A1S7UII8
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
    
 0.767
A0A1W2TK65
Histone H2A; Belongs to the histone H2A family.
   
 0.767
Your Current Organism:
Rosellinia necatrix
NCBI taxonomy Id: 77044
Other names: R. necatrix
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