STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1W2TFU2Rick_17kDa_Anti domain-containing protein. (300 aa)    
Predicted Functional Partners:
A0A1W2TM83
Putative luc7-domain-containing protein.
   
 0.966
A0A1S7UKE6
Putative sart-1 family protein.
   
 
 0.942
A0A1W2TNU2
Putative U1 small nuclear ribonucleoprotein.
   
 
 0.931
A0A1W2TGY6
Putative pwi domain mRNA processing protein.
   
 0.924
A0A1W2TB97
Putative FF domain-containing protein.
   
 
 0.922
A0A1W2TDW0
Putative pre-mRNA-processing ATP-dependent RNA helicase PRP5.
   
 0.909
A0A1S7URL4
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
   
 
 0.895
A0A1W2TLB9
Putative cap binding protein.
   
 
 0.886
A0A1W2TAR5
Putative U2 small nuclear ribonucleoprotein A.
   
 
 0.882
A0A1W2TMU2
Nuclear cap-binding protein subunit 2.
   
 
 0.865
Your Current Organism:
Rosellinia necatrix
NCBI taxonomy Id: 77044
Other names: R. necatrix
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