A0A1W2TFU5 protein (Rosellinia necatrix) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1W2TFU5

Uncharacterized protein. (565 aa)

Predicted Functional Partners:

A0A1W2TXM4

0.806

A0A1W2TSI1

0.751

A0A1S7UPY0

0.670

A0A1W2TC15

0.658

A0A1W2TGI8

0.658

A0A1W2TH74

0.658

A0A1W2TMS9

0.658

A0A1W2TQ03

0.639

A0A1W2TR84

0.639

A0A1W2TBF5

0.637

Your Current Organism:

Rosellinia necatrix

NCBI taxonomy Id: 77044
Other names: R. necatrix

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1S7UPY0	A0A1W2TFU5	Uncharacterized protein.	Uncharacterized protein.	0.670
A0A1S7UPY0	A0A1W2TXM4	Uncharacterized protein.	Uncharacterized protein.	0.680
A0A1W2TBF5	A0A1W2TFU5	Putative tryptophanase.	Uncharacterized protein.	0.637
A0A1W2TC15	A0A1W2TFU5	Uncharacterized protein.	Uncharacterized protein.	0.658
A0A1W2TC15	A0A1W2TXM4	Uncharacterized protein.	Uncharacterized protein.	0.680
A0A1W2TFU5	A0A1S7UPY0	Uncharacterized protein.	Uncharacterized protein.	0.670
A0A1W2TFU5	A0A1W2TBF5	Uncharacterized protein.	Putative tryptophanase.	0.637
A0A1W2TFU5	A0A1W2TC15	Uncharacterized protein.	Uncharacterized protein.	0.658
A0A1W2TFU5	A0A1W2TGI8	Uncharacterized protein.	Uncharacterized protein.	0.658
A0A1W2TFU5	A0A1W2TH74	Uncharacterized protein.	Uncharacterized protein.	0.658
A0A1W2TFU5	A0A1W2TMS9	Uncharacterized protein.	Putative homeobox domain-containing protein.	0.658
A0A1W2TFU5	A0A1W2TQ03	Uncharacterized protein.	Uncharacterized protein.	0.639
A0A1W2TFU5	A0A1W2TR84	Uncharacterized protein.	Putative CAMK protein kinase.	0.639
A0A1W2TFU5	A0A1W2TSI1	Uncharacterized protein.	Putative WW Rsp5 WWP.	0.751
A0A1W2TFU5	A0A1W2TXM4	Uncharacterized protein.	Uncharacterized protein.	0.806
A0A1W2TGI8	A0A1W2TFU5	Uncharacterized protein.	Uncharacterized protein.	0.658
A0A1W2TGI8	A0A1W2TXM4	Uncharacterized protein.	Uncharacterized protein.	0.680
A0A1W2TH74	A0A1W2TFU5	Uncharacterized protein.	Uncharacterized protein.	0.658
A0A1W2TH74	A0A1W2TXM4	Uncharacterized protein.	Uncharacterized protein.	0.680
A0A1W2TMS9	A0A1W2TFU5	Putative homeobox domain-containing protein.	Uncharacterized protein.	0.658