STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1W2TID7Putative ATP-dependent RNA helicase dbp6. (861 aa)    
Predicted Functional Partners:
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.920
A0A1W2TI27
Putative sas10 utp3 family protein.
   
  0.907
A0A1W2TNE6
U3 small nucleolar RNA-associated protein 22.
   
  0.898
A0A1W2TEV9
Putative urb2 npa2 family protein.
   
 
 0.893
A0A1W2TFG9
Putative small nucleolar ribonucleoprotein complex subunit utp14 protein.
   
 0.890
A0A1W2TJ01
Putative ATP-dependent RNA helicase ROK1.
  
0.883
A0A1S7UV58
Putative ribosome assembly protein 3 protein.
   
 
 0.877
A0A1W2THA6
Putative ATP-dependent RNA helicase dbp9.
  
 
0.867
SPB1
AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
   
 0.862
A0A1W2TEA5
Putative ribosome biogenesis protein urb1.
   
 
 0.860
Your Current Organism:
Rosellinia necatrix
NCBI taxonomy Id: 77044
Other names: R. necatrix
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.