STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1W2TK35Putative pseudouridylate synthase 3. (708 aa)    
Predicted Functional Partners:
A0A1W2TQ35
Putative family pseudouridylate synthase.
   
 0.880
A0A1S7UJE1
Putative ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.868
A0A1S8AA37
Putative centromere microtubule-binding protein cbf5.
   
 0.832
A0A1S8AAJ9
Putative centromere microtubule-binding protein cbf5 protein.
   
 0.832
A0A1S7UKF0
Putative RNA polymerase Rpb3 insert domain-containing protein.
  
  
 0.830
A0A1W2TGU5
Putative DNA-directed RNA polymerases i and iii 40 kDa polypeptide.
  
  
 0.830
A0A1W2TV74
Putative ribosomal RNA-processing protein 1.
   
    0.800
A0A1W2TMN1
Putative tRNA pseudouridine synthase D.
   
 
 0.790
A0A1W2TV01
Putative prion formation protein 1.
  
   0.789
TRM82
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.779
Your Current Organism:
Rosellinia necatrix
NCBI taxonomy Id: 77044
Other names: R. necatrix
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