STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1W2TLJ4Putative serine threonine-protein kinase; Belongs to the protein kinase superfamily. (410 aa)    
Predicted Functional Partners:
A0A1S7ULX6
Putative CDK-activating kinase assembly factor MAT1.
   
 0.999
A0A1S8A766
Putative cyclin ccl1; Belongs to the cyclin family.
    
 0.999
A0A1W2TK87
Putative transcription initiation factor TFIIH subunit 3.
    
 0.998
A0A1W2TG82
Putative transcription initiation factor IIE subunit beta.
   
 0.997
A0A1W2TQT6
Putative transcription initiation factor TFIIE subunit alpha.
    
 0.997
A0A1W2TC43
General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.
   
 0.995
A0A1W2TUA4
Putative DNA repair helicase rad15.
    
 0.995
A0A1W2TBR0
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.994
A0A1W2TUC9
Putative transcription initiation factor TFIIH subunit 1.
    
 0.992
A0A1S8A9C7
Putative DNA excision repair protein ERCC-3.
    
 0.991
Your Current Organism:
Rosellinia necatrix
NCBI taxonomy Id: 77044
Other names: R. necatrix
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.