STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1W2TMP0Putative RNA polymerase ii-paf1 protein. (479 aa)    
Predicted Functional Partners:
A0A1W2TMW2
Putative tetratricopeptide repeat protein 1.
   
 0.999
A0A1W2TRC6
Putative meiotic recombination protein rec14.
   
 0.996
A0A1W2TD28
Putative RNA polymerase 2 transcription elongation factor protein.
   
 0.995
A0A1W2THB0
FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]
   
 0.994
A0A1S7UN21
Putative FACT complex subunit SPT16.
    
 0.991
A0A1S8A4Q9
Putative cdc73 family RNA pol II accessory factor.
  
 0.989
A0A1W2TSY0
Putative Leo1-like protein.
   
 0.988
A0A1S8A4M5
Putative RNA polymerase ii-associated protein.
   
 0.986
A0A1W2TBR0
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.973
A0A1S7UKF0
Putative RNA polymerase Rpb3 insert domain-containing protein.
   
 0.971
Your Current Organism:
Rosellinia necatrix
NCBI taxonomy Id: 77044
Other names: R. necatrix
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