A0A1W2TTL7 protein (Rosellinia necatrix) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1W2TTL7

Putative transcription factor. (580 aa)

Predicted Functional Partners:

A0A1W2TDQ7

0.796

A0A1S7UK11

0.561

A0A1W2TG80

0.551

A0A1W2TEQ1

0.550

A0A1S7UI57

0.545

A0A1S7UTD5

0.545

A0A1W2TWR9

0.545

A0A1S7UJC3

0.544

A0A1W2TBX5

0.544

A0A1W2TF87

0.544

Your Current Organism:

Rosellinia necatrix

NCBI taxonomy Id: 77044
Other names: R. necatrix

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1S7UI57	A0A1S7UJC3	Putative mitochondrial ribosomal protein subunit s18.	Putative mitochondrial ribosomal small subunit component.	0.999
A0A1S7UI57	A0A1S7UTD5	Putative mitochondrial ribosomal protein subunit s18.	Putative 37S ribosomal protein mrp4 protein.	0.999
A0A1S7UI57	A0A1W2TBX5	Putative mitochondrial ribosomal protein subunit s18.	Putative 40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.991
A0A1S7UI57	A0A1W2TEQ1	Putative mitochondrial ribosomal protein subunit s18.	Putative 30S ribosomal protein mitochondrial.	0.999
A0A1S7UI57	A0A1W2TF87	Putative mitochondrial ribosomal protein subunit s18.	Putative ribosomal protein S16.	0.999
A0A1S7UI57	A0A1W2TTL7	Putative mitochondrial ribosomal protein subunit s18.	Putative transcription factor.	0.545
A0A1S7UI57	A0A1W2TWR9	Putative mitochondrial ribosomal protein subunit s18.	Putative ribosomal protein S15.	0.999
A0A1S7UJC3	A0A1S7UI57	Putative mitochondrial ribosomal small subunit component.	Putative mitochondrial ribosomal protein subunit s18.	0.999
A0A1S7UJC3	A0A1S7UTD5	Putative mitochondrial ribosomal small subunit component.	Putative 37S ribosomal protein mrp4 protein.	0.999
A0A1S7UJC3	A0A1W2TBX5	Putative mitochondrial ribosomal small subunit component.	Putative 40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.986
A0A1S7UJC3	A0A1W2TEQ1	Putative mitochondrial ribosomal small subunit component.	Putative 30S ribosomal protein mitochondrial.	0.999
A0A1S7UJC3	A0A1W2TF87	Putative mitochondrial ribosomal small subunit component.	Putative ribosomal protein S16.	0.999
A0A1S7UJC3	A0A1W2TTL7	Putative mitochondrial ribosomal small subunit component.	Putative transcription factor.	0.544
A0A1S7UJC3	A0A1W2TWR9	Putative mitochondrial ribosomal small subunit component.	Putative ribosomal protein S15.	0.999
A0A1S7UK11	A0A1W2TTL7	Putative yt521-b-like splicing.	Putative transcription factor.	0.561
A0A1S7UTD5	A0A1S7UI57	Putative 37S ribosomal protein mrp4 protein.	Putative mitochondrial ribosomal protein subunit s18.	0.999
A0A1S7UTD5	A0A1S7UJC3	Putative 37S ribosomal protein mrp4 protein.	Putative mitochondrial ribosomal small subunit component.	0.999
A0A1S7UTD5	A0A1W2TBX5	Putative 37S ribosomal protein mrp4 protein.	Putative 40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.993
A0A1S7UTD5	A0A1W2TEQ1	Putative 37S ribosomal protein mrp4 protein.	Putative 30S ribosomal protein mitochondrial.	0.999
A0A1S7UTD5	A0A1W2TF87	Putative 37S ribosomal protein mrp4 protein.	Putative ribosomal protein S16.	0.999