STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1W2TWT5Putative farnesyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. (347 aa)    
Predicted Functional Partners:
A0A1W2TL68
Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family.
  
 0.948
A0A1W2TC05
Putative squalene synthase.
  
 0.940
A0A1W2TEC8
Putative isopentenyl-diphosphate Delta-isomerase.
 
 
 0.921
A0A1W2TU49
Putative phytoene synthase.
  
 0.901
A0A1W2TCK1
Alkyl transferase; Belongs to the UPP synthase family.
  
 
 0.900
A0A1W2TG04
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
   
 0.896
A0A1W2TW61
Putative geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
    
 0.895
A0A1W2TQB7
Putative hexaprenyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
    
 0.894
A0A1W2TW21
Tryptophan synthase.
    
 0.882
A0A1S7ULG3
Putative geranylgeranyltransferase type I alpha subunit.
     
 0.877
Your Current Organism:
Rosellinia necatrix
NCBI taxonomy Id: 77044
Other names: R. necatrix
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