STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ76960.1Agmatine/peptidylarginine deiminase. (514 aa)    
Predicted Functional Partners:
SDZ82667.1
N-carbamoylputrescine amidase.
 
 
 0.842
SDZ76980.1
KAP family P-loop domain-containing protein.
       0.634
SDZ76996.1
Nucleotidyl transferase AbiEii toxin, Type IV TA system.
       0.634
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
 
  
 0.548
SDZ77012.1
Protein of unknown function.
       0.506
SDZ77031.1
Protein of unknown function DUF262.
       0.506
SDZ77049.1
Transcriptional regulator with AbiEi antitoxin N-terminal domain.
       0.506
SDZ82651.1
Agmatine deiminase; Belongs to the agmatine deiminase family.
  
  
 
0.492
Your Current Organism:
Prevotella bryantii
NCBI taxonomy Id: 77095
Other names: Bacteroides (Prevotella) ruminicola subsp. brevis biovar 3, CIP 105474, DSM 11371, P. bryantii, strain B14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.