STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ80401.1alpha-N-arabinofuranosidase. (523 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.960
SEA27494.1
Alpha-L-arabinofuranosidase.
 
 
 
0.912
uxaC
Glucuronate isomerase.
     
 0.830
SDZ80381.1
Sugar (pentulose or hexulose) kinase.
 
    0.805
SDZ81751.1
Alpha-L-arabinofuranosidase C-terminus.
 
 
 
0.740
tkt
Transketolase; Belongs to the transketolase family.
       0.733
SEA30107.1
Arabinan endo-1,5-alpha-L-arabinosidase.
  
  
  0.725
SEA44921.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 43 family.
 
 
  0.687
SEA30163.1
Arabinan endo-1,5-alpha-L-arabinosidase.
 
  
  0.669
SEA44020.1
Hypothetical protein.
 
    0.668
Your Current Organism:
Prevotella bryantii
NCBI taxonomy Id: 77095
Other names: Bacteroides (Prevotella) ruminicola subsp. brevis biovar 3, CIP 105474, DSM 11371, P. bryantii, strain B14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.