Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDZ82211.1 | SDZ82233.1 | SAMN05216455_101421 | SAMN05216455_101422 | Protein of unknown function. | Flavodoxin I; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family. | 0.891 |
SDZ82233.1 | SDZ82211.1 | SAMN05216455_101422 | SAMN05216455_101421 | Flavodoxin I; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family. | Protein of unknown function. | 0.891 |
SDZ82233.1 | SDZ82254.1 | SAMN05216455_101422 | SAMN05216455_101423 | Flavodoxin I; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family. | Hypothetical protein. | 0.422 |
SDZ82233.1 | SEA10656.1 | SAMN05216455_101422 | SAMN05216455_103186 | Flavodoxin I; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family. | Sulfite reductase (ferredoxin); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.407 |
SDZ82233.1 | nifJ | SAMN05216455_101422 | SAMN05216455_104158 | Flavodoxin I; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.709 |
SDZ82254.1 | SDZ82233.1 | SAMN05216455_101423 | SAMN05216455_101422 | Hypothetical protein. | Flavodoxin I; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family. | 0.422 |
SEA10656.1 | SDZ82233.1 | SAMN05216455_103186 | SAMN05216455_101422 | Sulfite reductase (ferredoxin); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | Flavodoxin I; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family. | 0.407 |
SEA10656.1 | nifJ | SAMN05216455_103186 | SAMN05216455_104158 | Sulfite reductase (ferredoxin); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.608 |
nifJ | SDZ82233.1 | SAMN05216455_104158 | SAMN05216455_101422 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Flavodoxin I; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family. | 0.709 |
nifJ | SEA10656.1 | SAMN05216455_104158 | SAMN05216455_103186 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Sulfite reductase (ferredoxin); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.608 |