STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ86169.1Hypothetical protein. (236 aa)    
Predicted Functional Partners:
spo0J
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
       0.842
soj
Chromosome partitioning protein.
       0.784
SDZ84388.1
Hypothetical protein.
  
    0.759
SDZ85729.1
Long-chain fatty acid transport protein.
  
     0.738
SDZ96403.1
Tetratricopeptide repeat-containing protein.
  
     0.733
SDZ86191.1
Membrane-bound lytic murein transglycosylase D.
  
    0.727
SDZ88840.1
OstA-like protein.
  
     0.727
SDZ95641.1
Protein of unknown function.
  
     0.724
SDZ82836.1
Lipopolysaccharide-assembly.
  
    0.723
SEA15690.1
Outer membrane protein assembly factor BamA.
  
     0.710
Your Current Organism:
Prevotella bryantii
NCBI taxonomy Id: 77095
Other names: Bacteroides (Prevotella) ruminicola subsp. brevis biovar 3, CIP 105474, DSM 11371, P. bryantii, strain B14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.