STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ86482.1Protein of unknown function. (263 aa)    
Predicted Functional Partners:
SDZ86458.1
Hypothetical protein.
       0.842
SDZ74399.1
Putative porin.
  
     0.764
SEA21848.1
Protein of unknown function.
  
     0.764
SEA52606.1
Sporulation related domain-containing protein.
  
     0.764
SEA34614.1
Protein of unknown function.
  
     0.758
rsmD
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD.
  
    0.757
SEA39233.1
Hypothetical protein.
  
     0.751
SEA18661.1
Protein of unknown function.
  
     0.750
SEA34859.1
Hypothetical protein.
  
     0.750
SEA55445.1
Outer membrane autotransporter barrel domain-containing protein.
  
     0.750
Your Current Organism:
Prevotella bryantii
NCBI taxonomy Id: 77095
Other names: Bacteroides (Prevotella) ruminicola subsp. brevis biovar 3, CIP 105474, DSM 11371, P. bryantii, strain B14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.