STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ87312.1L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (476 aa)    
Predicted Functional Partners:
SDZ87289.1
Rhamnulose-1-phosphate aldolase.
 
 
 0.870
rhaB
Rhamnulokinase.
 
 
 0.708
SDZ80338.1
L-ribulose-5-phosphate 4-epimerase.
  
 
 0.658
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
     
 0.562
SEA26747.1
Alpha-L-rhamnosidase N-terminal domain-containing protein.
  
     0.533
SDZ87257.1
MFS transporter, SP family, inositol transporter.
  
  
 0.515
SDZ80401.1
alpha-N-arabinofuranosidase.
  
 
 0.491
SEA26868.1
alpha-L-rhamnosidase.
  
     0.477
SDZ87336.1
Hypothetical protein.
       0.421
rhaU
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.
 
     0.418
Your Current Organism:
Prevotella bryantii
NCBI taxonomy Id: 77095
Other names: Bacteroides (Prevotella) ruminicola subsp. brevis biovar 3, CIP 105474, DSM 11371, P. bryantii, strain B14
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