STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ88557.1VTC domain-containing protein. (265 aa)    
Predicted Functional Partners:
SDZ88533.1
Protein of unknown function.
 
     0.931
SEA05737.1
Protein of unknown function.
 
     0.750
SDZ88374.1
Protein of unknown function.
 
     0.697
SDZ88513.1
Protein of unknown function.
       0.697
SDZ94493.1
Hypothetical protein.
  
     0.584
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
       0.497
SDZ76509.1
Long-chain fatty acid transport protein.
  
     0.460
SEA17989.1
Trypsin-like peptidase domain-containing protein.
  
     0.427
SDZ95224.1
Phage tail tape measure protein, TP901 family, core region.
  
     0.420
SEA00231.1
Mechanosensitive ion channel.
  
     0.402
Your Current Organism:
Prevotella bryantii
NCBI taxonomy Id: 77095
Other names: Bacteroides (Prevotella) ruminicola subsp. brevis biovar 3, CIP 105474, DSM 11371, P. bryantii, strain B14
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