Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDZ75382.1 | SDZ94548.1 | SAMN05216455_10177 | SAMN05216455_10220 | MutS domain V; Belongs to the DNA mismatch repair MutS family. | MutS domain I. | 0.503 |
SDZ75382.1 | SDZ96820.1 | SAMN05216455_10177 | SAMN05216455_10298 | MutS domain V; Belongs to the DNA mismatch repair MutS family. | DNA mismatch repair protein MutS2. | 0.677 |
SDZ75382.1 | dnaN | SAMN05216455_10177 | SAMN05216455_101284 | MutS domain V; Belongs to the DNA mismatch repair MutS family. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.861 |
SDZ75382.1 | mutL | SAMN05216455_10177 | SAMN05216455_101730 | MutS domain V; Belongs to the DNA mismatch repair MutS family. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.965 |
SDZ75382.1 | polA | SAMN05216455_10177 | SAMN05216455_106144 | MutS domain V; Belongs to the DNA mismatch repair MutS family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.854 |
SDZ75382.1 | recQ | SAMN05216455_10177 | SAMN05216455_101387 | MutS domain V; Belongs to the DNA mismatch repair MutS family. | ATP-dependent DNA helicase RecQ. | 0.489 |
SDZ75382.1 | recQ-2 | SAMN05216455_10177 | SAMN05216455_101736 | MutS domain V; Belongs to the DNA mismatch repair MutS family. | ATP-dependent DNA helicase RecQ. | 0.489 |
SDZ75382.1 | topA | SAMN05216455_10177 | SAMN05216455_10694 | MutS domain V; Belongs to the DNA mismatch repair MutS family. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.563 |
SDZ94515.1 | SDZ94548.1 | SAMN05216455_10219 | SAMN05216455_10220 | Hypothetical protein. | MutS domain I. | 0.648 |
SDZ94515.1 | SDZ94589.1 | SAMN05216455_10219 | SAMN05216455_10221 | Hypothetical protein. | Phosphoribosyl transferase domain-containing protein. | 0.538 |
SDZ94548.1 | SDZ75382.1 | SAMN05216455_10220 | SAMN05216455_10177 | MutS domain I. | MutS domain V; Belongs to the DNA mismatch repair MutS family. | 0.503 |
SDZ94548.1 | SDZ94515.1 | SAMN05216455_10220 | SAMN05216455_10219 | MutS domain I. | Hypothetical protein. | 0.648 |
SDZ94548.1 | SDZ94589.1 | SAMN05216455_10220 | SAMN05216455_10221 | MutS domain I. | Phosphoribosyl transferase domain-containing protein. | 0.643 |
SDZ94548.1 | SDZ96820.1 | SAMN05216455_10220 | SAMN05216455_10298 | MutS domain I. | DNA mismatch repair protein MutS2. | 0.771 |
SDZ94548.1 | dnaN | SAMN05216455_10220 | SAMN05216455_101284 | MutS domain I. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.862 |
SDZ94548.1 | mutL | SAMN05216455_10220 | SAMN05216455_101730 | MutS domain I. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.975 |
SDZ94548.1 | polA | SAMN05216455_10220 | SAMN05216455_106144 | MutS domain I. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.872 |
SDZ94548.1 | recQ | SAMN05216455_10220 | SAMN05216455_101387 | MutS domain I. | ATP-dependent DNA helicase RecQ. | 0.489 |
SDZ94548.1 | recQ-2 | SAMN05216455_10220 | SAMN05216455_101736 | MutS domain I. | ATP-dependent DNA helicase RecQ. | 0.489 |
SDZ94548.1 | topA | SAMN05216455_10220 | SAMN05216455_10694 | MutS domain I. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.563 |
page 1 of 4