STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA21458.1Family of unknown function. (1454 aa)    
Predicted Functional Partners:
SEA15690.1
Outer membrane protein assembly factor BamA.
 
   
 0.770
SDZ75090.1
Hypothetical protein.
  
     0.767
SDZ74399.1
Putative porin.
  
     0.764
SDZ85658.1
Peptidyl-prolyl cis-trans isomerase D.
  
     0.759
SEA39703.1
Protein of unknown function.
  
     0.750
SEA19964.1
Hypothetical protein.
  
     0.744
SEA18661.1
Protein of unknown function.
  
     0.742
SDZ82836.1
Lipopolysaccharide-assembly.
  
     0.741
SDZ81093.1
Sporulation related domain-containing protein.
 
     0.738
SEA21848.1
Protein of unknown function.
  
     0.732
Your Current Organism:
Prevotella bryantii
NCBI taxonomy Id: 77095
Other names: Bacteroides (Prevotella) ruminicola subsp. brevis biovar 3, CIP 105474, DSM 11371, P. bryantii, strain B14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.