STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA29692.1Alpha-amylase. (668 aa)    
Predicted Functional Partners:
pulA
Pullulanase; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.947
malQ
4-alpha-glucanotransferase.
 
 
 0.932
glgB
1,4-alpha-glucan branching enzyme.
 
 
 0.927
susB
Glycosyl-hydrolase 97 C-terminal, oligomerisation.
 
  
  0.920
malP
Starch phosphorylase.
  
 0.911
SDZ98222.1
Alpha-amylase.
    
 0.886
SEA29980.1
Glycosidase; Belongs to the glycosyl hydrolase 13 family.
 
  
  0.690
SEA29718.1
Hypothetical protein.
 
     0.660
SEA29631.1
Arabinogalactan endo-1,4-beta-galactosidase.
 
   
 0.623
SEA29676.1
Arabinogalactan endo-1,4-beta-galactosidase.
 
   
 0.614
Your Current Organism:
Prevotella bryantii
NCBI taxonomy Id: 77095
Other names: Bacteroides (Prevotella) ruminicola subsp. brevis biovar 3, CIP 105474, DSM 11371, P. bryantii, strain B14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.