STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA30607.1Starch-binding associating with outer membrane. (585 aa)    
Predicted Functional Partners:
SEA30581.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.934
SEA30635.1
IPT/TIG domain-containing protein.
 
  
  0.924
SEA30663.1
IPT/TIG domain-containing protein.
 
  
  0.909
SDZ97730.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.839
SEA46175.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.816
SEA30753.1
Hypothetical protein; Belongs to the glycosyl hydrolase 26 family.
 
     0.800
SEA17724.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.797
SEA30032.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.796
SDZ98336.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.786
SDZ85549.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.769
Your Current Organism:
Prevotella bryantii
NCBI taxonomy Id: 77095
Other names: Bacteroides (Prevotella) ruminicola subsp. brevis biovar 3, CIP 105474, DSM 11371, P. bryantii, strain B14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.