node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
prfB | rplD | SAMN05216455_10638 | SAMN05216455_108166 | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.977 |
prfB | rplM | SAMN05216455_10638 | SAMN05216455_105126 | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.979 |
prfB | rplQ | SAMN05216455_10638 | SAMN05216455_108139 | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | Large subunit ribosomal protein L17. | 0.972 |
prfB | rplT | SAMN05216455_10638 | SAMN05216455_101361 | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.976 |
prfB | rplU | SAMN05216455_10638 | SAMN05216455_101151 | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.989 |
prfB | rplX | SAMN05216455_10638 | SAMN05216455_108156 | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | Large subunit ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.972 |
prfB | rpmA | SAMN05216455_10638 | SAMN05216455_101152 | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.981 |
prfB | rpsG | SAMN05216455_10638 | SAMN05216455_108170 | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.979 |
prfB | rpsL | SAMN05216455_10638 | SAMN05216455_108171 | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.977 |
prfB | rpsP | SAMN05216455_10638 | SAMN05216455_10425 | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.977 |
rplD | prfB | SAMN05216455_108166 | SAMN05216455_10638 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.977 |
rplD | rplM | SAMN05216455_108166 | SAMN05216455_105126 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.996 |
rplD | rplQ | SAMN05216455_108166 | SAMN05216455_108139 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Large subunit ribosomal protein L17. | 0.997 |
rplD | rplT | SAMN05216455_108166 | SAMN05216455_101361 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.994 |
rplD | rplU | SAMN05216455_108166 | SAMN05216455_101151 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.994 |
rplD | rplX | SAMN05216455_108166 | SAMN05216455_108156 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Large subunit ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
rplD | rpmA | SAMN05216455_108166 | SAMN05216455_101152 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.992 |
rplD | rpsG | SAMN05216455_108166 | SAMN05216455_108170 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
rplD | rpsL | SAMN05216455_108166 | SAMN05216455_108171 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.999 |
rplD | rpsP | SAMN05216455_108166 | SAMN05216455_10425 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.994 |