Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDZ80782.1 | SEA33784.1 | SAMN05216455_101353 | SAMN05216455_1069 | Citrate synthase; Belongs to the citrate synthase family. | acetyl-CoA synthetase. | 0.927 |
SDZ80782.1 | SEA38217.1 | SAMN05216455_101353 | SAMN05216455_106176 | Citrate synthase; Belongs to the citrate synthase family. | Succinate CoA transferase. | 0.782 |
SDZ80782.1 | SEA44333.1 | SAMN05216455_101353 | SAMN05216455_10773 | Citrate synthase; Belongs to the citrate synthase family. | 2-oxoglutarate ferredoxin oxidoreductase subunit beta. | 0.544 |
SDZ80782.1 | nifJ | SAMN05216455_101353 | SAMN05216455_104158 | Citrate synthase; Belongs to the citrate synthase family. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.957 |
SDZ80782.1 | pckA | SAMN05216455_101353 | SAMN05216455_106207 | Citrate synthase; Belongs to the citrate synthase family. | Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. | 0.724 |
SDZ80782.1 | pflB | SAMN05216455_101353 | SAMN05216455_102108 | Citrate synthase; Belongs to the citrate synthase family. | Formate C-acetyltransferase. | 0.588 |
SDZ80782.1 | pta | SAMN05216455_101353 | SAMN05216455_10625 | Citrate synthase; Belongs to the citrate synthase family. | Phosphate acetyltransferase. | 0.541 |
SDZ80782.1 | vorB | SAMN05216455_101353 | SAMN05216455_10774 | Citrate synthase; Belongs to the citrate synthase family. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.543 |
SEA33762.1 | SEA33784.1 | SAMN05216455_1068 | SAMN05216455_1069 | Transcriptional regulator, XRE family with cupin sensor. | acetyl-CoA synthetase. | 0.987 |
SEA33762.1 | nifJ | SAMN05216455_1068 | SAMN05216455_104158 | Transcriptional regulator, XRE family with cupin sensor. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.617 |
SEA33784.1 | SDZ80782.1 | SAMN05216455_1069 | SAMN05216455_101353 | acetyl-CoA synthetase. | Citrate synthase; Belongs to the citrate synthase family. | 0.927 |
SEA33784.1 | SEA33762.1 | SAMN05216455_1069 | SAMN05216455_1068 | acetyl-CoA synthetase. | Transcriptional regulator, XRE family with cupin sensor. | 0.987 |
SEA33784.1 | SEA38217.1 | SAMN05216455_1069 | SAMN05216455_106176 | acetyl-CoA synthetase. | Succinate CoA transferase. | 0.920 |
SEA33784.1 | SEA44333.1 | SAMN05216455_1069 | SAMN05216455_10773 | acetyl-CoA synthetase. | 2-oxoglutarate ferredoxin oxidoreductase subunit beta. | 0.909 |
SEA33784.1 | ackA | SAMN05216455_1069 | SAMN05216455_10624 | acetyl-CoA synthetase. | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | 0.955 |
SEA33784.1 | nifJ | SAMN05216455_1069 | SAMN05216455_104158 | acetyl-CoA synthetase. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.967 |
SEA33784.1 | pckA | SAMN05216455_1069 | SAMN05216455_106207 | acetyl-CoA synthetase. | Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. | 0.898 |
SEA33784.1 | pflB | SAMN05216455_1069 | SAMN05216455_102108 | acetyl-CoA synthetase. | Formate C-acetyltransferase. | 0.886 |
SEA33784.1 | pta | SAMN05216455_1069 | SAMN05216455_10625 | acetyl-CoA synthetase. | Phosphate acetyltransferase. | 0.944 |
SEA33784.1 | vorB | SAMN05216455_1069 | SAMN05216455_10774 | acetyl-CoA synthetase. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.912 |
page 1 of 4