STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA46523.1alpha-L-rhamnosidase; Belongs to the glycosyl hydrolase 28 family. (1030 aa)    
Predicted Functional Partners:
SDZ83037.1
Ig-like domain-containing protein.
  
 0.912
SEA61232.1
GDSL-like Lipase/Acylhydrolase family protein.
  
 0.911
SDZ86241.1
Pectinesterase.
  
  
 0.890
SDZ75578.1
Pectinesterase.
  
  0.874
SDZ97465.1
Lysophospholipase L1.
 
  0.800
SDZ98366.1
Hypothetical protein.
  
  
 0.779
SDZ86616.1
Lysophospholipase L1.
 
  0.691
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
  0.689
SEA06416.1
Pectate lyase.
  
  
  0.642
SEA51255.1
WD40-like Beta Propeller Repeat.
  
 
 0.635
Your Current Organism:
Prevotella bryantii
NCBI taxonomy Id: 77095
Other names: Bacteroides (Prevotella) ruminicola subsp. brevis biovar 3, CIP 105474, DSM 11371, P. bryantii, strain B14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.