STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA47266.1Cell wall-active antibiotics response 4TMS YvqF. (182 aa)    
Predicted Functional Partners:
SEA47241.1
Outer membrane receptor proteins, mostly Fe transport.
 
     0.887
SEA47286.1
Transcriptional regulator, LytTR family.
 
    0.864
SEA11933.1
Beta-fructofuranosidase.
  
     0.747
SEA47132.1
AraC-type DNA-binding protein.
  
     0.745
SEA01018.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
  
     0.727
SDZ84286.1
Hypothetical protein.
  
  
 0.726
SEA11902.1
Protein of unknown function.
  
     0.726
SEA59257.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.725
SEA01237.1
WYL domain-containing protein.
  
     0.718
SEA05737.1
Protein of unknown function.
  
     0.651
Your Current Organism:
Prevotella bryantii
NCBI taxonomy Id: 77095
Other names: Bacteroides (Prevotella) ruminicola subsp. brevis biovar 3, CIP 105474, DSM 11371, P. bryantii, strain B14
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