STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA53368.1Rod shape-determining protein MreC. (287 aa)    
Predicted Functional Partners:
mreB
Rod shape-determining protein MreB.
 
 
 0.992
mrdA
Penicillin-binding protein 2.
 
 
 0.961
rodA
Rod shape determining protein RodA; Belongs to the SEDS family.
 
  
 0.930
mreD
Rod shape-determining protein MreD.
  
    0.845
purH_1
Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase.
       0.795
SEA34896.1
Cell division protein FtsI (penicillin-binding protein 3).
 
 
 0.772
pbp
Penicillin-binding protein 2.
 
 
 0.728
radC
DNA repair protein RadC; Belongs to the UPF0758 family.
  
  
 0.599
SEA57289.1
RadC-like JAB domain-containing protein.
  
  
 0.599
SDZ82763.1
Protein of unknown function.
  
 
 0.577
Your Current Organism:
Prevotella bryantii
NCBI taxonomy Id: 77095
Other names: Bacteroides (Prevotella) ruminicola subsp. brevis biovar 3, CIP 105474, DSM 11371, P. bryantii, strain B14
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.