STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA52175.1GSCFA family protein. (291 aa)    
Predicted Functional Partners:
SEA52155.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
     0.877
SEA52202.1
Membrane protein YfhO.
 
     0.778
hemD
uroporphyrinogen-III synthase.
  
     0.604
SDZ98420.1
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
   
  0.581
SEA11572.1
Rhamnogalacturonan endolyase.
  
  0.577
SDZ97676.1
Rhamnogalacturonan endolyase.
  
  0.576
SDZ85948.1
Protein of unknown function.
  
     0.574
SEA61232.1
GDSL-like Lipase/Acylhydrolase family protein.
  
  
  0.562
SEA17898.1
alpha-L-rhamnosidase.
   
  0.560
SEA27014.1
alpha-L-rhamnosidase.
   
  0.560
Your Current Organism:
Prevotella bryantii
NCBI taxonomy Id: 77095
Other names: Bacteroides (Prevotella) ruminicola subsp. brevis biovar 3, CIP 105474, DSM 11371, P. bryantii, strain B14
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