STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN05662.1Microcin C transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (530 aa)    
Predicted Functional Partners:
SEO13433.1
Peptide/nickel transport system permease protein.
 
 0.996
SEN05598.1
Microcin C transport system permease protein.
 
 0.988
SEN05632.1
Microcin C transport system permease protein.
 
 0.987
SEO13415.1
Peptide/nickel transport system permease protein.
 
 0.976
SEN05566.1
Microcin C transport system substrate-binding protein.
 
 
 0.966
SEN55408.1
Peptide/nickel transport system permease protein.
 
 0.942
SEN55419.1
Peptide/nickel transport system permease protein.
 
 0.906
SEO13390.1
Peptide/nickel transport system substrate-binding protein.
 
 
  0.822
SEN55456.1
Peptide/nickel transport system substrate-binding protein.
 
 
  0.797
SEN55350.1
Peptide/nickel transport system ATP-binding protein.
 
 
 
0.720
Your Current Organism:
Halomonas aquamarina
NCBI taxonomy Id: 77097
Other names: ATCC 14400, Achromobacter aquamarinus, Alcaligenes aestus, Alcaligenes aquamarinus, Bacterium aquamarinum, CCUG 16157, CIP 105454, DSM 30161, Deleya aesta, Deleya aquamarina, Deleya aquimarina, H. aquamarina, IAM 12550, KCTC 22193, LMG 2853, LMG:2853, NCIMB 557, strain 558, strain ZoBell and Upham 558
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