STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN09069.1hydroxymethylglutaryl-CoA lyase. (305 aa)    
Predicted Functional Partners:
SEN09010.1
methylglutaconyl-CoA hydratase.
 
 0.998
SEN08979.1
3-methylcrotonyl-CoA carboxylase beta subunit.
 
 0.990
SEN09036.1
3-methylcrotonoyl-CoA carboxylase, alpha subunit.
 
 0.987
SEN02384.1
3-oxoacid CoA-transferase subunit A.
  
 
 0.950
SEN02423.1
3-oxoacid CoA-transferase subunit B.
  
 
 0.943
SEN34098.1
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
  0.933
fadA
3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
  
 
  0.933
SEO20730.1
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
  0.933
SEO25565.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
  0.933
sucC
succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
   
 0.925
Your Current Organism:
Halomonas aquamarina
NCBI taxonomy Id: 77097
Other names: ATCC 14400, Achromobacter aquamarinus, Alcaligenes aestus, Alcaligenes aquamarinus, Bacterium aquamarinum, CCUG 16157, CIP 105454, DSM 30161, Deleya aesta, Deleya aquamarina, Deleya aquimarina, H. aquamarina, IAM 12550, KCTC 22193, LMG 2853, LMG:2853, NCIMB 557, strain 558, strain ZoBell and Upham 558
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