STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN54869.1Conserved hypothetical protein. (348 aa)    
Predicted Functional Partners:
SEN54907.1
Alpha-1,6-mannosyltransferase.
 
 
 0.960
rnb
Exoribonuclease-2; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction.
       0.704
SEO05135.1
Hypothetical protein.
  
     0.700
SEN86854.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
 
  
 0.669
SEN40324.1
Protein of unknown function.
  
     0.663
SEN73327.1
Protein of unknown function.
  
     0.663
SEO07285.1
H-NS histone family protein.
  
     0.637
SEN64937.1
Nucleoid-associated protein.
  
     0.605
SEN86673.1
TIGR02444 family protein.
  
     0.539
SEN83484.1
Hypothetical protein.
  
     0.529
Your Current Organism:
Halomonas aquamarina
NCBI taxonomy Id: 77097
Other names: ATCC 14400, Achromobacter aquamarinus, Alcaligenes aestus, Alcaligenes aquamarinus, Bacterium aquamarinum, CCUG 16157, CIP 105454, DSM 30161, Deleya aesta, Deleya aquamarina, Deleya aquimarina, H. aquamarina, IAM 12550, KCTC 22193, LMG 2853, LMG:2853, NCIMB 557, strain 558, strain ZoBell and Upham 558
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.