STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO50512.1Transposase DDE domain group 1. (356 aa)    
Predicted Functional Partners:
SEO06563.1
Transposase DDE domain group 1.
 
     0.774
SEO24904.1
Transposase DDE domain group 1.
 
     0.774
SEO43645.1
Transposase DDE domain group 1.
 
     0.774
SEN60722.1
Protein of unknown function.
  
     0.617
SEN14125.1
Bile acid:Na+ symporter, BASS family.
  
     0.505
SEN45413.1
Uncharacterized membrane protein, DUF373 family.
  
     0.464
SEN45542.1
ATP-dependent Clp protease ATP-binding subunit ClpC.
  
     0.449
SEO35985.1
HNH endonuclease.
  
     0.449
SEO15319.1
DDE superfamily endonuclease.
  
     0.425
Your Current Organism:
Halomonas aquamarina
NCBI taxonomy Id: 77097
Other names: ATCC 14400, Achromobacter aquamarinus, Alcaligenes aestus, Alcaligenes aquamarinus, Bacterium aquamarinum, CCUG 16157, CIP 105454, DSM 30161, Deleya aesta, Deleya aquamarina, Deleya aquimarina, H. aquamarina, IAM 12550, KCTC 22193, LMG 2853, LMG:2853, NCIMB 557, strain 558, strain ZoBell and Upham 558
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.