D910_09774 protein (Dendroctonus ponderosae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D910_09774

RING-type domain-containing protein. (113 aa)

Predicted Functional Partners:

D910_00515

0.999

D910_08287

0.999

D910_12350

0.998

D910_04372

0.995

D910_05033

0.995

D910_11732

0.994

D910_08713

0.994

D910_05639

0.986

D910_04514

0.981

D910_10599

0.981

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00515	D910_04372	J3JVE5	N6UCE3	Uncharacterized protein; Belongs to the SKP1 family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.978
D910_00515	D910_04514	J3JVE5	N6U9W5	Uncharacterized protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.589
D910_00515	D910_05033	J3JVE5	U4U3K1	Uncharacterized protein; Belongs to the SKP1 family.	F-box domain-containing protein.	0.999
D910_00515	D910_05639	J3JVE5	J3JTL0	Uncharacterized protein; Belongs to the SKP1 family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.927
D910_00515	D910_08287	J3JVE5	U4ULS0	Uncharacterized protein; Belongs to the SKP1 family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.999
D910_00515	D910_08713	J3JVE5	N6SWB9	Uncharacterized protein; Belongs to the SKP1 family.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.880
D910_00515	D910_09774	J3JVE5	J3JVZ1	Uncharacterized protein; Belongs to the SKP1 family.	RING-type domain-containing protein.	0.999
D910_00515	D910_10599	J3JVE5	U4UT63	Uncharacterized protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.731
D910_00515	D910_11732	J3JVE5	J3JUX7	Uncharacterized protein; Belongs to the SKP1 family.	Ubiquitin-like domain-containing protein.	0.766
D910_00515	D910_12350	J3JVE5	U4UXQ9	Uncharacterized protein; Belongs to the SKP1 family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.867
D910_04372	D910_00515	N6UCE3	J3JVE5	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein; Belongs to the SKP1 family.	0.978
D910_04372	D910_04514	N6UCE3	N6U9W5	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.527
D910_04372	D910_05033	N6UCE3	U4U3K1	CULLIN_2 domain-containing protein; Belongs to the cullin family.	F-box domain-containing protein.	0.956
D910_04372	D910_05639	N6UCE3	J3JTL0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.898
D910_04372	D910_08287	N6UCE3	U4ULS0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.790
D910_04372	D910_08713	N6UCE3	N6SWB9	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.853
D910_04372	D910_09774	N6UCE3	J3JVZ1	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-type domain-containing protein.	0.995
D910_04372	D910_10599	N6UCE3	U4UT63	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.540
D910_04372	D910_11732	N6UCE3	J3JUX7	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-like domain-containing protein.	0.688
D910_04372	D910_12350	N6UCE3	U4UXQ9	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.880