STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAC_00335WGS project CABT00000000 data, contig 2.1. (468 aa)    
Predicted Functional Partners:
SMAC_02938
WGS project CABT00000000 data, contig 2.12.
    
  0.556
SMAC_00686
WGS project CABT00000000 data, contig 2.2.
     
 0.537
SMAC_12590
WGS project CABT00000000 data, contig 2.5.
    
 0.503
SMAC_01713
WGS project CABT00000000 data, contig 2.5.
    
 0.503
SMAC_00641
WGS project CABT00000000 data, contig 2.2.
    
 0.451
SMAC_06073
WGS project CABT00000000 data, contig 2.32.
    
 0.451
SMAC_02336
WGS project CABT00000000 data, contig 2.3.
    
  0.438
SMAC_06558
WGS project CABT00000000 data, contig 2.28.
    
  0.438
SMAC_07925
WGS project CABT00000000 data, contig 2.29.
    
  0.438
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.