STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAC_00396WGS project CABT00000000 data, contig 2.1. (250 aa)    
Predicted Functional Partners:
SMAC_02125
WGS project CABT00000000 data, contig 2.18.
   
 0.898
SMAC_00892
WGS project CABT00000000 data, contig 2.2.
  
 0.674
SMAC_06209
WGS project CABT00000000 data, contig 2.3.
  
 0.674
SMAC_06594
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
   
 0.617
SMAC_05413
WGS project CABT00000000 data, contig 2.6.
   
 0.502
SMAC_04684
WGS project CABT00000000 data, contig 2.21.
   
 0.502
SMAC_00908
WGS project CABT00000000 data, contig 2.2; Belongs to the STXBP/unc-18/SEC1 family.
    
  0.479
SMAC_06468
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 0.463
SMAC_04557
Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. Belongs to the catalase family.
  
 0.463
SMAC_05719
WGS project CABT00000000 data, contig 2.30.
  
 0.463
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.