Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFG36048.1Hypothetical protein. (551 aa)    
Predicted Functional Partners:
AFG36049.1
Micrococcal nuclease-like nuclease; PFAM: Staphylococcal nuclease homologue.
 
  
 0.866
AFG34700.1
Hypothetical protein.
 
 
 0.829
AFG35314.1
PFAM: FG-GAP repeat.
 
   
 0.802
AFG34261.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
  
 0.795
AFG34896.1
Putative S-layer protein; PFAM: S-layer homology domain.
 
 
 0.795
AFG35420.1
Hypothetical protein.
 
   
 0.794
AFG35049.1
PFAM: Competence protein.
 
 
 
 0.793
AFG35150.1
Hypothetical protein.
 
 
 0.792
AFG34981.1
Hypothetical protein.
  
    0.791
AFG35787.1
PFAM: UvrD/REP helicase.
 
     0.779
Your Current Organism:
Fervidobacterium pennivorans
NCBI taxonomy Id: 771875
Other names: F. pennivorans DSM 9078, Fervidobacterium pennivorans DSM 9078, Fervidobacterium pennivorans str. DSM 9078, Fervidobacterium pennivorans strain DSM 9078
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