Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFG36050.1Hypothetical protein. (196 aa)    
Predicted Functional Partners:
AFG36049.1
Micrococcal nuclease-like nuclease; PFAM: Staphylococcal nuclease homologue.
 
   
 0.777
AFG36048.1
Hypothetical protein.
 
   
0.715
AFG35834.1
Hypothetical protein.
  
     0.689
AFG34174.1
PFAM: FecR protein.
  
     0.664
AFG35596.1
PFAM: D-alanyl-D-alanine carboxypeptidase.
 
     0.656
AFG34981.1
Hypothetical protein.
  
     0.655
AFG35778.1
PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Domain of unknown function (DUF2223).
  
     0.655
AFG35787.1
PFAM: UvrD/REP helicase.
  
     0.650
AFG35777.1
Hypothetical protein.
  
     0.629
AFG35835.1
PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Domain of unknown function (DUF2223).
  
     0.621
Your Current Organism:
Fervidobacterium pennivorans
NCBI taxonomy Id: 771875
Other names: F. pennivorans DSM 9078, Fervidobacterium pennivorans DSM 9078, Fervidobacterium pennivorans str. DSM 9078, Fervidobacterium pennivorans strain DSM 9078
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