LOC100177240 protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC100177240

Alpha-crystallin A chain-like; Belongs to the small heat shock protein (HSP20) family. (190 aa)

Predicted Functional Partners:

F6WQ08_CIOIN

0.977

H2XMA8_CIOIN

0.949

LOC100178703

0.939

LOC100184540

0.924

LOC100175824

0.904

F6YNJ1_CIOIN

0.821

F6S4F7_CIOIN

0.806

hsp70

0.788

LOC100187210

0.788

LOC100181469

0.788

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6S4F7_CIOIN	F6YNJ1_CIOIN	ENSCINP00000016461	ENSCINP00000023416	Non-specific serine/threonine protein kinase.	HATPase_c domain-containing protein.	0.938
F6S4F7_CIOIN	LOC100177240	ENSCINP00000016461	ENSCINP00000001149	Non-specific serine/threonine protein kinase.	Alpha-crystallin A chain-like; Belongs to the small heat shock protein (HSP20) family.	0.806
F6S4F7_CIOIN	LOC100178703	ENSCINP00000016461	ENSCINP00000016755	Non-specific serine/threonine protein kinase.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.583
F6WQ08_CIOIN	LOC100177240	ENSCINP00000011785	ENSCINP00000001149	Protein kinase domain-containing protein.	Alpha-crystallin A chain-like; Belongs to the small heat shock protein (HSP20) family.	0.977
F6YNJ1_CIOIN	F6S4F7_CIOIN	ENSCINP00000023416	ENSCINP00000016461	HATPase_c domain-containing protein.	Non-specific serine/threonine protein kinase.	0.938
F6YNJ1_CIOIN	H2XMA8_CIOIN	ENSCINP00000023416	ENSCINP00000030791	HATPase_c domain-containing protein.	Uncharacterized protein.	0.433
F6YNJ1_CIOIN	LOC100177240	ENSCINP00000023416	ENSCINP00000001149	HATPase_c domain-containing protein.	Alpha-crystallin A chain-like; Belongs to the small heat shock protein (HSP20) family.	0.821
F6YNJ1_CIOIN	LOC100181469	ENSCINP00000023416	ENSCINP00000035627	HATPase_c domain-containing protein.	Uncharacterized protein LOC100181469 isoform X2.	0.906
F6YNJ1_CIOIN	LOC100187210	ENSCINP00000023416	ENSCINP00000019652	HATPase_c domain-containing protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.948
F6YNJ1_CIOIN	hsp70	ENSCINP00000023416	ENSCINP00000011757	HATPase_c domain-containing protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.906
H2XMA8_CIOIN	F6YNJ1_CIOIN	ENSCINP00000030791	ENSCINP00000023416	Uncharacterized protein.	HATPase_c domain-containing protein.	0.433
H2XMA8_CIOIN	LOC100177240	ENSCINP00000030791	ENSCINP00000001149	Uncharacterized protein.	Alpha-crystallin A chain-like; Belongs to the small heat shock protein (HSP20) family.	0.949
H2XMA8_CIOIN	LOC100181469	ENSCINP00000030791	ENSCINP00000035627	Uncharacterized protein.	Uncharacterized protein LOC100181469 isoform X2.	0.899
H2XMA8_CIOIN	LOC100187210	ENSCINP00000030791	ENSCINP00000019652	Uncharacterized protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.918
H2XMA8_CIOIN	hsp70	ENSCINP00000030791	ENSCINP00000011757	Uncharacterized protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.899
LOC100175824	LOC100177240	ENSCINP00000019043	ENSCINP00000001149	116 kDa U5 small nuclear ribonucleoprotein component.	Alpha-crystallin A chain-like; Belongs to the small heat shock protein (HSP20) family.	0.904
LOC100177240	F6S4F7_CIOIN	ENSCINP00000001149	ENSCINP00000016461	Alpha-crystallin A chain-like; Belongs to the small heat shock protein (HSP20) family.	Non-specific serine/threonine protein kinase.	0.806
LOC100177240	F6WQ08_CIOIN	ENSCINP00000001149	ENSCINP00000011785	Alpha-crystallin A chain-like; Belongs to the small heat shock protein (HSP20) family.	Protein kinase domain-containing protein.	0.977
LOC100177240	F6YNJ1_CIOIN	ENSCINP00000001149	ENSCINP00000023416	Alpha-crystallin A chain-like; Belongs to the small heat shock protein (HSP20) family.	HATPase_c domain-containing protein.	0.821
LOC100177240	H2XMA8_CIOIN	ENSCINP00000001149	ENSCINP00000030791	Alpha-crystallin A chain-like; Belongs to the small heat shock protein (HSP20) family.	Uncharacterized protein.	0.949