LOC100177452 protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100177452

Uncharacterized protein. (603 aa)

Predicted Functional Partners:

zf(c2h2)-102

0.999

F6UX10_CIOIN

0.993

LOC100179894

0.988

H2XKT2_CIOIN

0.987

zf(parp)-2

0.983

LOC100185652

0.981

F7A9P4_CIOIN

0.977

H2Y3C6_CIOIN

0.977

F6U857_CIOIN

0.976

LOC100185732

0.972

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6U857_CIOIN	F6UX10_CIOIN	ENSCINP00000021753	ENSCINP00000019410	Uncharacterized protein.	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	0.977
F6U857_CIOIN	H2XKT2_CIOIN	ENSCINP00000021753	ENSCINP00000030264	Uncharacterized protein.	3'-5' exonuclease domain-containing protein.	0.504
F6U857_CIOIN	LOC100177452	ENSCINP00000021753	ENSCINP00000001166	Uncharacterized protein.	Uncharacterized protein.	0.976
F6U857_CIOIN	LOC100179894	ENSCINP00000021753	ENSCINP00000004562	Uncharacterized protein.	Werner syndrome ATP-dependent helicase homolog isoform X1.	0.577
F6U857_CIOIN	zf(c2h2)-102	ENSCINP00000021753	ENSCINP00000009339	Uncharacterized protein.	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.	0.968
F6U857_CIOIN	zf(parp)-2	ENSCINP00000021753	ENSCINP00000005256	Uncharacterized protein.	DNA ligase.	0.984
F6UX10_CIOIN	F6U857_CIOIN	ENSCINP00000019410	ENSCINP00000021753	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	Uncharacterized protein.	0.977
F6UX10_CIOIN	F7A9P4_CIOIN	ENSCINP00000019410	ENSCINP00000023638	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	NUC194 domain-containing protein.	0.899
F6UX10_CIOIN	H2XKT2_CIOIN	ENSCINP00000019410	ENSCINP00000030264	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	3'-5' exonuclease domain-containing protein.	0.790
F6UX10_CIOIN	H2Y3C6_CIOIN	ENSCINP00000019410	ENSCINP00000036411	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.899
F6UX10_CIOIN	LOC100177452	ENSCINP00000019410	ENSCINP00000001166	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	Uncharacterized protein.	0.993
F6UX10_CIOIN	LOC100179894	ENSCINP00000019410	ENSCINP00000004562	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	Werner syndrome ATP-dependent helicase homolog isoform X1.	0.790
F6UX10_CIOIN	LOC100185652	ENSCINP00000019410	ENSCINP00000010283	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	Mre11_DNA_bind domain-containing protein; Belongs to the MRE11/RAD32 family.	0.775
F6UX10_CIOIN	LOC100185732	ENSCINP00000019410	ENSCINP00000008060	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	DRMBL domain-containing protein.	0.973
F6UX10_CIOIN	zf(c2h2)-102	ENSCINP00000019410	ENSCINP00000009339	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.	0.993
F7A9P4_CIOIN	F6UX10_CIOIN	ENSCINP00000023638	ENSCINP00000019410	NUC194 domain-containing protein.	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	0.899
F7A9P4_CIOIN	H2XKT2_CIOIN	ENSCINP00000023638	ENSCINP00000030264	NUC194 domain-containing protein.	3'-5' exonuclease domain-containing protein.	0.411
F7A9P4_CIOIN	H2Y3C6_CIOIN	ENSCINP00000023638	ENSCINP00000036411	NUC194 domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.945
F7A9P4_CIOIN	LOC100177452	ENSCINP00000023638	ENSCINP00000001166	NUC194 domain-containing protein.	Uncharacterized protein.	0.977
F7A9P4_CIOIN	LOC100179894	ENSCINP00000023638	ENSCINP00000004562	NUC194 domain-containing protein.	Werner syndrome ATP-dependent helicase homolog isoform X1.	0.625